RBH Heatmap Creation

RBH Heatmap Creation

Usage

plot_rbh(rbh, network_membership_list, file_name = NA, width = 10, height = 8)

Arguments

rbh

reciprocal best hits matrix (output of construct_rbh_correlation_based() or construct_rbh_overlap_based())

network_membership_list

a list containing community membership scores for each network. Where rownames contain unique gene ids and column names are community names

file_name

File name

width

figure width

height

figure height

Value

pheatmap object

Examples

if (FALSE) {
memb_list <- list(
  GSE39582 = GSE39582_icwgcna$community_membership,
  READ = read_icwgcna$community_membership,
  COAD = coad_icwgcna$community_membership
)
ma <- construct_rbh_overlap_based(memb_list)
plot_rbh(ma, memb_list)
}